STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSBP3Single-stranded DNA-binding protein 3. (314 aa)    
Predicted Functional Partners:
LDB2
LIM domain-binding protein 2.
    
 
 0.827
LDB1
LIM domain-binding protein 1.
    
 
 0.827
LMO4
LIM domain transcription factor LMO4.
    
 
 0.691
LHX2
LIM homeobox 2.
    
 
 0.686
LHX9
LIM homeobox 9.
    
 
 0.686
ENSMVIP00005009359
annotation not available
    
 
 0.668
LHX4
LIM/homeobox protein Lhx4.
    
 
 0.668
ENSMVIP00005015693
annotation not available
    
 
 0.668
ENSMVIP00005015841
annotation not available
    
 
 0.668
LMO1
Rhombotin-1.
    
 
 0.654
Your Current Organism:
Manacus vitellinus
NCBI taxonomy Id: 328815
Other names: M. vitellinus, golden-collared manakin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.