STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOPXHomeodomain-only protein. (73 aa)    
Predicted Functional Partners:
LDB2
LIM domain-binding protein 2.
    
 0.719
SRF
MADS-box domain-containing protein.
    
 0.719
LDB1
LIM domain-binding protein 1.
    
 0.719
ENSMVIP00005019014
annotation not available
    
 0.625
CBFB
Core-binding factor subunit beta.
    
  0.566
FAM107A
Protein FAM107A.
      
 0.502
TPK1
Thiamin pyrophosphokinase 1.
    
  0.476
GATA5
Transcription factor GATA-5.
    
 0.475
GATA6
GATA binding protein 6.
    
 0.475
GATA4
Uncharacterized protein.
    
 0.475
Your Current Organism:
Manacus vitellinus
NCBI taxonomy Id: 328815
Other names: M. vitellinus, golden-collared manakin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.