STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1ZSU6Uncharacterized protein. (758 aa)    
Predicted Functional Partners:
A0A1Y2BUA0
Uncharacterized protein.
   
 0.998
A0A1Y2D107
Uncharacterized protein.
   
 0.943
A0A1Y2CE05
Matrin-type domain-containing protein.
    
 0.843
A0A1Y2CBL1
Splicing factor 3B subunit 1.
   
 0.839
A0A1Y2CJG2
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.813
A0A1Y2CBH8
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.
   
 0.800
A0A1Y2CDG0
Small nuclear ribonucleo protein polypeptide A.
   
  0.760
A0A1Y2CZQ1
DEAD-domain-containing protein; Belongs to the DEAD box helicase family.
   
 0.759
A0A1Y2CYG4
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.757
A0A1Y2BYV0
Sm domain-containing protein.
   
 0.754
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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