STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2APL5ABC transporter domain-containing protein. (857 aa)    
Predicted Functional Partners:
A0A1Y2AN28
Subtilisin-like protein; Belongs to the peptidase S8 family.
   
 
  0.463
A0A1Y2BU37
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
   
 
  0.463
A0A1Y2CAA3
Subtilisin-like protein; Belongs to the peptidase S8 family.
   
 
  0.463
A0A1Y2CHZ8
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
   
 
  0.463
A0A1Y2CZN5
Subtilisin-like protein.
   
 
  0.463
A0A1Y2D3A5
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
   
 
  0.463
A0A1Y2C008
Cytochrome oxidase assembly.
    
 0.454
A0A1Y2BD54
Glycoside hydrolase.
   
 
  0.449
A0A1Y2B2H0
TAP42-like protein.
    
 0.444
A0A1Y2D1X8
3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.
     
 0.410
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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