STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2AV14Retrieval of early ER protein Rer1. (164 aa)    
Predicted Functional Partners:
A0A1Y2B9V2
Calreticulin-domain-containing protein.
    
 
 0.670
A0A1Y2D1N0
WD40 repeat-like protein.
   
 
 0.567
A0A1Y2BUV6
Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.
   
 
 0.557
A0A1Y2C2M9
ER lumen protein retaining receptor.
   
  
 0.554
A0A1Y2BKG8
SURF4-domain-containing protein.
   
 
 0.512
A0A1Y2BM82
SURF4-domain-containing protein.
   
 
 0.512
A0A1Y2CWX3
ER-derived vesicles protein ERV29.
   
 
 0.512
A0A1Y2B284
Endosomal protein P24B.
   
 
 0.507
A0A1Y2BSP6
Bap31 domain-containing protein.
   
 
 0.453
A0A1Y2CG81
Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
   
  
 0.447
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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