STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2B1J4SRP40_C domain-containing protein. (80 aa)    
Predicted Functional Partners:
A0A1Y2C1P1
Nop-domain-containing protein.
   
 
 0.929
A0A1Y2BXM5
Nop-domain-containing protein.
   
 
 0.928
A0A1Y2CRF4
Putative rRNA pseudouridine synthase.
   
 
 0.901
A0A1Y2BT42
Fibrillarin.
   
 
 0.883
A0A1Y2D1F1
Ribosomal protein L1.
   
 
 0.797
A0A1Y2CF29
NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.773
A0A1Y2C015
CBF-domain-containing protein.
   
   0.769
A0A1Y2C106
Brix-domain-containing protein.
   
   0.763
A0A1Y2CL05
P-loop containing nucleoside triphosphate hydrolase protein.
   
 
 0.760
A0A1Y2BEM7
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.752
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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