STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2BGL4DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (756 aa)    
Predicted Functional Partners:
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.970
A0A1Y2C017
RRM domain-containing protein.
   
 
 0.934
A0A1Y2BFF9
Utp14-domain-containing protein.
   
 0.926
A0A1Y2CF29
NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.925
A0A1Y2C106
Brix-domain-containing protein.
   
   0.924
A0A1Y2BRM5
RNA-binding domain-containing protein.
   
 
 0.914
A0A1Y2CNY3
Eukaryotic rRNA processing.
   
 0.913
A0A1Y2B2C8
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.902
A0A1Y2D1H1
WD40 repeat-like protein.
   
 0.902
A0A1Y2BCF9
Nop14-like protein.
   
 0.900
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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