STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2BQ64Class II aaRS and biotin synthetase. (601 aa)    
Predicted Functional Partners:
A0A1Y2C8H0
Acetyl-CoA carboxylase.
  
 0.990
A0A1Y2B7U8
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
 
 0.986
A0A1Y2BU45
Biotin synthase.
  
 
 0.896
A0A1Y2CRZ8
Pantoate-beta-alanine ligase.
  
 
 0.896
A0A1Y2CQU4
Carboxyl transferase.
  
 
 0.844
A0A1Y2CV13
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.776
A0A1Y2C2G8
Carbamoyl-phosphate synthase L chain ATP-binding protein.
  
 
 0.757
A0A1Y2CV79
Glutathione synthetase ATP-binding domain-like protein.
  
 
 0.757
A0A1Y2ACI2
Carboxyltransferase subunit of acetyl-CoA carboxylase.
  
 
 0.748
A0A1Y2BQK7
Methylcrotonoyl-CoA carboxylase.
  
 
 0.748
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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