A0A1Y2BSU3 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2BSU3

Uncharacterized protein. (169 aa)

Predicted Functional Partners:

A0A1Y2BVQ6

0.999

A0A1Y2CVD8

0.980

A0A1Y2BWK9

0.976

A0A1Y2CYA1

0.971

A0A1Y2CV73

0.946

A0A1Y2C5C7

0.899

A0A1Y2D131

0.898

A0A1Y2CZ97

0.892

A0A1Y2BRU9

0.877

A0A1Y2CN46

0.863

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2BRU9	A0A1Y2BSU3	DEP domain-containing protein.	Uncharacterized protein.	0.877
A0A1Y2BRU9	A0A1Y2BVQ6	DEP domain-containing protein.	Roadblock/LC7 domain-containing protein.	0.846
A0A1Y2BRU9	A0A1Y2BWK9	DEP domain-containing protein.	Gtr1/RagA G protein.	0.976
A0A1Y2BRU9	A0A1Y2CN46	DEP domain-containing protein.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.681
A0A1Y2BRU9	A0A1Y2CV73	DEP domain-containing protein.	Nitrogen permease regulator 2.	0.998
A0A1Y2BRU9	A0A1Y2CVD8	DEP domain-containing protein.	Uncharacterized protein.	0.981
A0A1Y2BRU9	A0A1Y2CYA1	DEP domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.745
A0A1Y2BRU9	A0A1Y2CZ97	DEP domain-containing protein.	Putative intracellular transport protein.	0.686
A0A1Y2BRU9	A0A1Y2D131	DEP domain-containing protein.	Uncharacterized protein.	0.999
A0A1Y2BSU3	A0A1Y2BRU9	Uncharacterized protein.	DEP domain-containing protein.	0.877
A0A1Y2BSU3	A0A1Y2BVQ6	Uncharacterized protein.	Roadblock/LC7 domain-containing protein.	0.999
A0A1Y2BSU3	A0A1Y2BWK9	Uncharacterized protein.	Gtr1/RagA G protein.	0.976
A0A1Y2BSU3	A0A1Y2C5C7	Uncharacterized protein.	Aa_trans domain-containing protein.	0.899
A0A1Y2BSU3	A0A1Y2CN46	Uncharacterized protein.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.863
A0A1Y2BSU3	A0A1Y2CV73	Uncharacterized protein.	Nitrogen permease regulator 2.	0.946
A0A1Y2BSU3	A0A1Y2CVD8	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1Y2BSU3	A0A1Y2CYA1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.971
A0A1Y2BSU3	A0A1Y2CZ97	Uncharacterized protein.	Putative intracellular transport protein.	0.892
A0A1Y2BSU3	A0A1Y2D131	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A1Y2BVQ6	A0A1Y2BRU9	Roadblock/LC7 domain-containing protein.	DEP domain-containing protein.	0.846