STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2BX86PLP-dependent transferase. (322 aa)    
Predicted Functional Partners:
A0A1Y2CJE2
IGPS-domain-containing protein.
    
 0.903
A0A1Y2CYI8
N-acetyl-gamma-glutamyl-phosphate reductase.
  
 
 0.873
A0A1Y2CZD3
Tryptophan synthase.
    
 0.848
A0A1Y2CBH1
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
  
 0.793
A0A1Y2CEW4
Homoserine dehydrogenase.
  
 0.770
A0A1Y2B4Y5
Spermine synthase; Belongs to the spermidine/spermine synthase family.
   
 0.729
A0A1Y2CNN2
Tryptophan synthase beta subunit-like PLP-dependent enzyme.
  
 0.729
A0A1Y2BTW9
FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 
 0.727
A0A1Y2CM92
Uncharacterized protein.
     
 0.726
A0A1Y2CCL8
PLP-dependent transferase.
  
 0.723
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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