STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2BZM4Pseudouridine synthase. (245 aa)    
Predicted Functional Partners:
A0A1Y2CWW2
Pseudouridine synthase.
   
 
 0.842
A0A1Y2CG09
DUF143-domain-containing protein.
  
 
 0.832
A0A1Y2CMK8
Uncharacterized protein.
   
   0.783
A0A1Y2CTC0
Mitochondrial GTPase 1; Mitochondrial GTPase involved in assembly of the large ribosomal subunit. Plays a role in expression of the mitochondrial translational machinery; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
   
 
 0.757
A0A1Y2C5K5
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.750
A0A1Y2B728
Uncharacterized protein.
    
 
 0.749
A0A1Y2C5H1
Translation protein; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.746
A0A1Y2CYG9
Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
   0.738
A0A1Y2AJ30
Ribosomal_L18e/L15P domain-containing protein.
  
   0.731
A0A1Y2D4C0
Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
  
 
 0.723
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
Server load: low (24%) [HD]