STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2C201Uroporphyrinogen decarboxylase. (355 aa)    
Predicted Functional Partners:
A0A1Y2BFI6
Porphobilinogen deaminase.
 
 0.983
A0A1Y2BD30
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.958
A0A1Y2B9E9
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.948
A0A1Y2C1Z5
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.947
A0A1Y2C1K5
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.933
A0A1Y2BNE9
Uncharacterized protein.
  
 0.913
A0A1Y2CSG0
Tetrapyrrole biosynthesis, uroporphyrinogen III synthase.
  
 
 0.900
A0A1Y2C8J4
TPR_REGION domain-containing protein.
    
 0.855
A0A1Y2CYI3
Uncharacterized protein.
  
 
 0.847
A0A1Y2CC11
Tetrapyrrole methylase.
    
 0.841
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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