STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2C6D62-amino-3-ketobutyrate coenzyme A ligase. (411 aa)    
Predicted Functional Partners:
A0A1Y2CED6
Acetyl-CoA synthetase-like protein.
 
 
 0.899
A0A1Y2C1G2
Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.880
A0A1Y2C6C9
NAD(P)-binding protein.
  
 
 0.873
A0A1Y2CZD3
Tryptophan synthase.
    
 0.848
A0A1Y2BUZ4
Uncharacterized protein.
  
 
 0.844
A0A1Y2CWI4
Beta_elim_lyase domain-containing protein.
  
 
 0.821
A0A1Y2C8X1
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.815
A0A1Y2CY96
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 0.814
A0A1Y2BU45
Biotin synthase.
 
 
 0.811
A0A1Y2CCL8
PLP-dependent transferase.
    
 0.807
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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