A0A1Y2C702 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2C702

AP-1 complex subunit gamma. (949 aa)

Predicted Functional Partners:

A0A1Y2CIF6

0.993

A0A1Y2D1C9

0.982

A0A1Y2BS51

0.979

A0A1Y2CMJ7

0.979

A0A1Y2CTW2

0.957

A0A1Y2CTZ3

0.957

A0A1Y2CJC9

0.954

A0A1Y2CA35

0.953

A0A1Y2C057

0.951

A0A1Y2CSU4

0.949

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2BS51	A0A1Y2C702	Uncharacterized protein.	AP-1 complex subunit gamma.	0.979
A0A1Y2BS51	A0A1Y2CA35	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.997
A0A1Y2BS51	A0A1Y2CIF6	Uncharacterized protein.	Actin-binding FH2.	0.831
A0A1Y2BS51	A0A1Y2CMJ7	Uncharacterized protein.	Uncharacterized protein.	0.979
A0A1Y2C057	A0A1Y2C702	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 complex subunit gamma.	0.951
A0A1Y2C057	A0A1Y2CA35	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.407
A0A1Y2C057	A0A1Y2CIF6	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Actin-binding FH2.	0.989
A0A1Y2C057	A0A1Y2CJC9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.992
A0A1Y2C057	A0A1Y2CSU4	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	0.989
A0A1Y2C057	A0A1Y2CTW2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.755
A0A1Y2C057	A0A1Y2CTZ3	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.755
A0A1Y2C057	A0A1Y2D1C9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin adaptor, mu subunit; Belongs to the adaptor complexes medium subunit family.	0.890
A0A1Y2C702	A0A1Y2BS51	AP-1 complex subunit gamma.	Uncharacterized protein.	0.979
A0A1Y2C702	A0A1Y2C057	AP-1 complex subunit gamma.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.951
A0A1Y2C702	A0A1Y2CA35	AP-1 complex subunit gamma.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.953
A0A1Y2C702	A0A1Y2CIF6	AP-1 complex subunit gamma.	Actin-binding FH2.	0.993
A0A1Y2C702	A0A1Y2CJC9	AP-1 complex subunit gamma.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.954
A0A1Y2C702	A0A1Y2CMJ7	AP-1 complex subunit gamma.	Uncharacterized protein.	0.979
A0A1Y2C702	A0A1Y2CSU4	AP-1 complex subunit gamma.	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	0.949
A0A1Y2C702	A0A1Y2CTW2	AP-1 complex subunit gamma.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.957