A0A1Y2C8U2 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2C8U2

Uncharacterized protein. (342 aa)

Predicted Functional Partners:

A0A1Y2CNK9

0.804

A0A1Y2BDV6

0.791

A0A1Y2CGN6

0.791

A0A1Y2BTQ0

0.772

A0A1Y2D0M7

0.726

A0A1Y2CX95

0.714

A0A1Y2CXQ9

0.714

A0A1Y2BXT5

0.689

A0A1Y2CUJ4

0.644

A0A1Y2D1I6

0.644

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2BDV6	A0A1Y2BXT5	Ubiquitin-domain-containing protein.	ANTH-domain-containing protein.	0.817
A0A1Y2BDV6	A0A1Y2C8U2	Ubiquitin-domain-containing protein.	Uncharacterized protein.	0.791
A0A1Y2BDV6	A0A1Y2CNK9	Ubiquitin-domain-containing protein.	Uncharacterized protein.	0.992
A0A1Y2BDV6	A0A1Y2CUJ4	Ubiquitin-domain-containing protein.	UBA domain-containing protein.	0.863
A0A1Y2BDV6	A0A1Y2CX95	Ubiquitin-domain-containing protein.	SH3 domain-containing protein.	0.605
A0A1Y2BDV6	A0A1Y2CXQ9	Ubiquitin-domain-containing protein.	BAR-domain-containing protein.	0.605
A0A1Y2BDV6	A0A1Y2D1I6	Ubiquitin-domain-containing protein.	Uncharacterized protein.	0.863
A0A1Y2BTQ0	A0A1Y2C8U2	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Uncharacterized protein.	0.772
A0A1Y2BTQ0	A0A1Y2D0M7	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.999
A0A1Y2BXT5	A0A1Y2BDV6	ANTH-domain-containing protein.	Ubiquitin-domain-containing protein.	0.817
A0A1Y2BXT5	A0A1Y2C8U2	ANTH-domain-containing protein.	Uncharacterized protein.	0.689
A0A1Y2BXT5	A0A1Y2CGN6	ANTH-domain-containing protein.	Ubiquitin-domain-containing protein.	0.902
A0A1Y2BXT5	A0A1Y2CNK9	ANTH-domain-containing protein.	Uncharacterized protein.	0.903
A0A1Y2BXT5	A0A1Y2CUJ4	ANTH-domain-containing protein.	UBA domain-containing protein.	0.695
A0A1Y2BXT5	A0A1Y2CX95	ANTH-domain-containing protein.	SH3 domain-containing protein.	0.725
A0A1Y2BXT5	A0A1Y2CXQ9	ANTH-domain-containing protein.	BAR-domain-containing protein.	0.823
A0A1Y2BXT5	A0A1Y2D1I6	ANTH-domain-containing protein.	Uncharacterized protein.	0.695
A0A1Y2C8U2	A0A1Y2BDV6	Uncharacterized protein.	Ubiquitin-domain-containing protein.	0.791
A0A1Y2C8U2	A0A1Y2BTQ0	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.772
A0A1Y2C8U2	A0A1Y2BXT5	Uncharacterized protein.	ANTH-domain-containing protein.	0.689