A0A1Y2CEC3 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2CEC3

F-box domain-containing protein. (226 aa)

Predicted Functional Partners:

A0A1Y2BUA0

0.707

A0A1Y2ASB6

0.585

A0A1Y2BX74

0.573

A0A1Y2C083

0.565

A0A1Y2BYV0

0.563

A0A1Y2C6Z4

0.554

A0A1Y2C9Z7

0.554

A0A1Y2CYU4

0.554

A0A1Y2BCZ8

0.549

A0A1Y2CYG4

0.548

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2ASB6	A0A1Y2BCZ8	PHD finger-like domain-containing protein 5A.	Small nuclear ribonucleoprotein G.	0.996
A0A1Y2ASB6	A0A1Y2BUA0	PHD finger-like domain-containing protein 5A.	Uncharacterized protein.	0.997
A0A1Y2ASB6	A0A1Y2BX74	PHD finger-like domain-containing protein 5A.	Small nuclear ribonucleoprotein Sm D3.	0.979
A0A1Y2ASB6	A0A1Y2BYV0	PHD finger-like domain-containing protein 5A.	Sm domain-containing protein.	0.992
A0A1Y2ASB6	A0A1Y2C083	PHD finger-like domain-containing protein 5A.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.993
A0A1Y2ASB6	A0A1Y2C6Z4	PHD finger-like domain-containing protein 5A.	RNA recognition protein.	0.966
A0A1Y2ASB6	A0A1Y2C9Z7	PHD finger-like domain-containing protein 5A.	U1 small nuclear ribonucleo protein A.	0.966
A0A1Y2ASB6	A0A1Y2CEC3	PHD finger-like domain-containing protein 5A.	F-box domain-containing protein.	0.585
A0A1Y2ASB6	A0A1Y2CYG4	PHD finger-like domain-containing protein 5A.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.978
A0A1Y2BCZ8	A0A1Y2ASB6	Small nuclear ribonucleoprotein G.	PHD finger-like domain-containing protein 5A.	0.996
A0A1Y2BCZ8	A0A1Y2BUA0	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.996
A0A1Y2BCZ8	A0A1Y2BX74	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D3.	0.999
A0A1Y2BCZ8	A0A1Y2BYV0	Small nuclear ribonucleoprotein G.	Sm domain-containing protein.	0.999
A0A1Y2BCZ8	A0A1Y2C083	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A1Y2BCZ8	A0A1Y2C6Z4	Small nuclear ribonucleoprotein G.	RNA recognition protein.	0.997
A0A1Y2BCZ8	A0A1Y2C9Z7	Small nuclear ribonucleoprotein G.	U1 small nuclear ribonucleo protein A.	0.968
A0A1Y2BCZ8	A0A1Y2CEC3	Small nuclear ribonucleoprotein G.	F-box domain-containing protein.	0.549
A0A1Y2BCZ8	A0A1Y2CYG4	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
A0A1Y2BUA0	A0A1Y2ASB6	Uncharacterized protein.	PHD finger-like domain-containing protein 5A.	0.997
A0A1Y2BUA0	A0A1Y2BCZ8	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.996