STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2CEX3SAM-dependent MTase TRM10-type domain-containing protein. (284 aa)    
Predicted Functional Partners:
TRM8
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
 
 0.805
A0A1Y2BTU6
MATE efflux family protein.
   
 0.795
A0A1Y2CBV4
MATE efflux family protein.
   
 0.795
A0A1Y2CMM0
MATE efflux family protein.
   
 0.795
A0A1Y2CMY1
MATE efflux family protein.
   
 0.795
A0A1Y2CYH8
WD_REPEATS_REGION domain-containing protein.
   
 
 0.759
A0A1Y2C017
RRM domain-containing protein.
   
   0.688
A0A1Y2CRI2
Pseudouridine synthase.
   
 
 0.676
A0A1Y2AMN5
zf-TRM13_CCCH domain-containing protein.
   
 
 0.671
A0A1Y2D0R5
Pseudouridine synthase.
   
 
 0.667
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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