STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2CHE4Uncharacterized protein. (697 aa)    
Predicted Functional Partners:
A0A1Y2BEJ7
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.999
A0A1Y2CYC2
Uncharacterized protein.
   
0.998
A0A1Y2B7N2
Snare-like protein; Belongs to the synaptobrevin family.
    
 0.997
A0A1Y2B4H1
WD40 repeat-like protein; Belongs to the WD repeat SEC13 family.
   
 0.992
A0A1Y2CS17
Putative GTP-binding protein SAR1; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.984
A0A1Y2D1F9
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
   
 0.981
A0A1Y2BK50
WD_REPEATS_REGION domain-containing protein.
   
 0.972
A0A1Y2BT24
WD_REPEATS_REGION domain-containing protein.
   
 0.972
A0A1Y2D393
t-SNARE.
    
 0.896
A0A1Y2CWK8
t-SNARE coiled-coil homology domain-containing protein.
    
 0.877
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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