STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2CJ53L-type lectin-like domain-containing protein. (340 aa)    
Predicted Functional Partners:
A0A1Y2BEJ7
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.779
A0A1Y2B284
Endosomal protein P24B.
   
 0.754
A0A1Y2CKT7
GOLD domain-containing protein.
   
 0.747
A0A1Y2B7N2
Snare-like protein; Belongs to the synaptobrevin family.
    
 0.712
A0A1Y2CWK8
t-SNARE coiled-coil homology domain-containing protein.
   
 
 0.702
A0A1Y2CHE4
Uncharacterized protein.
    
 0.696
A0A1Y2D4S2
L-type lectin-like domain-containing protein.
  
 
0.684
A0A1Y2B4H1
WD40 repeat-like protein; Belongs to the WD repeat SEC13 family.
   
 0.682
A0A1Y2CS17
Putative GTP-binding protein SAR1; Belongs to the small GTPase superfamily. SAR1 family.
   
 
 0.669
A0A1Y2CP29
Concanavalin A-like lectin/glucanase.
  
 
0.668
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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