STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2CKB8Family 4 carbohydrate esterase. (220 aa)    
Predicted Functional Partners:
A0A1Y2CEC5
MHYT domain-containing protein.
    
 0.770
A0A1Y2CWY2
Uncharacterized protein.
    
 0.694
A0A1Y2B415
Uncharacterized protein.
    
 0.672
A0A1Y2CA11
DNA repair exonuclease; Belongs to the MRE11/RAD32 family.
    
 0.671
A0A1Y2CBF0
Guanylate kinase-like domain-containing protein.
    
 0.655
A0A1Y2CX72
Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.
    
 0.650
A0A1Y2B8R0
Uncharacterized protein.
    
 0.648
A0A1Y2C8G2
Zinc-hook domain-containing protein.
    
  0.637
A0A1Y2AN12
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.627
A0A1Y2CP94
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.627
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.