STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2CNR0Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (386 aa)    
Predicted Functional Partners:
A0A1Y2B7E0
Protein prenylyltransferase.
    
 0.999
A0A1Y2D2R0
Terpenoid synthase; Belongs to the FPP/GGPP synthase family.
   
 0.875
A0A1Y2B8F4
Terpenoid synthase; Belongs to the FPP/GGPP synthase family.
   
 0.861
A0A1Y2C2F2
Terpenoid synthase.
   
 0.860
A0A1Y2C7C6
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.851
A0A1Y2C0A3
GPI2-domain-containing protein.
     
 0.841
A0A1Y2CF61
Uncharacterized protein.
     
 0.815
A0A1Y2B5L1
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
     
 0.809
A0A1Y2B6Z2
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
     
 0.809
A0A1Y2D0U6
Terpenoid synthase.
     
 0.758
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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