A0A1Y2CPB2 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2CPB2

NAD(P)-binding protein. (394 aa)

Predicted Functional Partners:

A0A1Y2D332

0.885

A0A1Y2CX14

0.879

A0A1Y2BR54

0.871

A0A1Y2CID7

0.868

A0A1Y2D0P5

0.868

A0A1Y2C7Q2

0.867

A0A1Y2BXE4

0.860

A0A1Y2CPC2

0.860

A0A1Y2D105

0.855

A0A1Y2CZV8

0.814

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2BR54	A0A1Y2BXE4	Gpi16 subunit, GPI transamidase component.	Phosphodiest-domain-containing protein.	0.731
A0A1Y2BR54	A0A1Y2C7Q2	Gpi16 subunit, GPI transamidase component.	Uncharacterized protein.	0.878
A0A1Y2BR54	A0A1Y2CPB2	Gpi16 subunit, GPI transamidase component.	NAD(P)-binding protein.	0.871
A0A1Y2BR54	A0A1Y2CPC2	Gpi16 subunit, GPI transamidase component.	Alkaline phosphatase-like protein.	0.731
A0A1Y2BR54	A0A1Y2CX14	Gpi16 subunit, GPI transamidase component.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
A0A1Y2BR54	A0A1Y2D105	Gpi16 subunit, GPI transamidase component.	Mannosyltransferase.	0.549
A0A1Y2BR54	A0A1Y2D332	Gpi16 subunit, GPI transamidase component.	PigN-domain-containing protein.	0.802
A0A1Y2BXE4	A0A1Y2BR54	Phosphodiest-domain-containing protein.	Gpi16 subunit, GPI transamidase component.	0.731
A0A1Y2BXE4	A0A1Y2CPB2	Phosphodiest-domain-containing protein.	NAD(P)-binding protein.	0.860
A0A1Y2BXE4	A0A1Y2CX14	Phosphodiest-domain-containing protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.783
A0A1Y2BXE4	A0A1Y2CZV8	Phosphodiest-domain-containing protein.	Dihydroceramide delta(4)-desaturase.	0.698
A0A1Y2BXE4	A0A1Y2D105	Phosphodiest-domain-containing protein.	Mannosyltransferase.	0.729
A0A1Y2C7Q2	A0A1Y2BR54	Uncharacterized protein.	Gpi16 subunit, GPI transamidase component.	0.878
A0A1Y2C7Q2	A0A1Y2CPB2	Uncharacterized protein.	NAD(P)-binding protein.	0.867
A0A1Y2C7Q2	A0A1Y2CX14	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.900
A0A1Y2C7Q2	A0A1Y2CZV8	Uncharacterized protein.	Dihydroceramide delta(4)-desaturase.	0.632
A0A1Y2C7Q2	A0A1Y2D105	Uncharacterized protein.	Mannosyltransferase.	0.876
A0A1Y2C7Q2	A0A1Y2D332	Uncharacterized protein.	PigN-domain-containing protein.	0.480
A0A1Y2CID7	A0A1Y2CPB2	PLP-dependent transferase.	NAD(P)-binding protein.	0.868
A0A1Y2CID7	A0A1Y2CZV8	PLP-dependent transferase.	Dihydroceramide delta(4)-desaturase.	0.686