STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2CRI2Pseudouridine synthase. (438 aa)    
Predicted Functional Partners:
A0A1Y2CRF4
Putative rRNA pseudouridine synthase.
  
 0.888
A0A1Y2CYH8
WD_REPEATS_REGION domain-containing protein.
   
 
 0.872
A0A1Y2CFZ9
FMN-linked oxidoreductase.
  
 
 0.805
A0A1Y2D0P7
WD40 repeat-like protein.
   
   0.748
A0A1Y2CMK8
Uncharacterized protein.
  
  
 0.738
TRM8
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.704
A0A1Y2CEX3
SAM-dependent MTase TRM10-type domain-containing protein.
   
 
 0.676
A0A1Y2CPW4
Insert subdomain of RNA polymerase alpha subunit.
  
  
 0.672
A0A1Y2CV36
RBP11-like subunits of RNA polymerase.
  
  
 0.672
A0A1Y2CWW2
Pseudouridine synthase.
  
 
 0.649
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.