A0A1Y2CS44 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2CS44

Putative tyrosine phosphatase family protein. (164 aa)

Predicted Functional Partners:

A0A1Y2C8U3

0.966

A0A1Y2CNX7

0.965

A0A1Y2AF45

0.799

A0A1Y2BFR0

0.787

A0A1Y2CK94

0.631

A0A1Y2CZC4

0.631

A0A1Y2BY28

0.628

A0A1Y2CDE1

0.619

A0A1Y2CBR0

0.618

A0A1Y2BQ30

0.613

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2AF45	A0A1Y2BFR0	NADH dehydrogenase subunit 4.	GTP-binding protein ypt1.	0.990
A0A1Y2AF45	A0A1Y2C8U3	NADH dehydrogenase subunit 4.	Protein-tyrosine phosphatase.	0.799
A0A1Y2AF45	A0A1Y2CBR0	NADH dehydrogenase subunit 4.	Uncharacterized protein.	0.418
A0A1Y2AF45	A0A1Y2CDE1	NADH dehydrogenase subunit 4.	GMP synthase.	0.414
A0A1Y2AF45	A0A1Y2CNX7	NADH dehydrogenase subunit 4.	Uncharacterized protein.	0.799
A0A1Y2AF45	A0A1Y2CS44	NADH dehydrogenase subunit 4.	Putative tyrosine phosphatase family protein.	0.799
A0A1Y2BFR0	A0A1Y2AF45	GTP-binding protein ypt1.	NADH dehydrogenase subunit 4.	0.990
A0A1Y2BFR0	A0A1Y2C8U3	GTP-binding protein ypt1.	Protein-tyrosine phosphatase.	0.787
A0A1Y2BFR0	A0A1Y2CNX7	GTP-binding protein ypt1.	Uncharacterized protein.	0.787
A0A1Y2BFR0	A0A1Y2CS44	GTP-binding protein ypt1.	Putative tyrosine phosphatase family protein.	0.787
A0A1Y2BQ30	A0A1Y2BY28	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Deoxythymidylate kinase, isoform CRA_b.	0.577
A0A1Y2BQ30	A0A1Y2C8U3	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Protein-tyrosine phosphatase.	0.613
A0A1Y2BQ30	A0A1Y2CBR0	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Uncharacterized protein.	0.742
A0A1Y2BQ30	A0A1Y2CDE1	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	GMP synthase.	0.645
A0A1Y2BQ30	A0A1Y2CK94	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Got1-like protein.	0.619
A0A1Y2BQ30	A0A1Y2CNX7	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Uncharacterized protein.	0.613
A0A1Y2BQ30	A0A1Y2CS44	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	Putative tyrosine phosphatase family protein.	0.613
A0A1Y2BY28	A0A1Y2BQ30	Deoxythymidylate kinase, isoform CRA_b.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.577
A0A1Y2BY28	A0A1Y2C8U3	Deoxythymidylate kinase, isoform CRA_b.	Protein-tyrosine phosphatase.	0.628
A0A1Y2BY28	A0A1Y2CDE1	Deoxythymidylate kinase, isoform CRA_b.	GMP synthase.	0.511