STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2CTH8Uncharacterized protein. (361 aa)    
Predicted Functional Partners:
A0A1Y2D5G5
Secretion chaperone CsaA.
    
 0.664
A0A1Y2B791
Nuclear cap-binding protein subunit 2.
    
 0.663
A0A1Y2D2L7
ARM repeat-containing protein.
    
 0.658
A0A1Y2BD21
S1 motif domain-containing protein.
   
 0.653
A0A1Y2BHG2
DEAD-domain-containing protein; Belongs to the DEAD box helicase family.
    
 0.652
A0A1Y2C6Z4
RNA recognition protein.
    
 0.651
A0A1Y2C9Z7
U1 small nuclear ribonucleo protein A.
    
 0.651
A0A1Y2CJK9
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.641
A0A1Y2BEM7
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.638
A0A1Y2C083
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.635
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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