A0A1Y2CVX4 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2CVX4

Uncharacterized protein. (383 aa)

Predicted Functional Partners:

A0A1Y2B562

0.999

A0A1Y2D3A1

0.999

A0A1Y2B6N6

0.986

A0A1Y2CWJ7

0.960

A0A1Y2CE85

0.957

A0A1Y2CIN7

0.951

A0A1Y2B0P9

0.861

A0A1Y2CYD3

0.860

A0A1Y2AD57

0.847

A0A1Y2BP62

0.847

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2AD57	A0A1Y2B0P9	Rep_fac_C domain-containing protein.	DNA polymerase.	0.780
A0A1Y2AD57	A0A1Y2B562	Rep_fac_C domain-containing protein.	Uncharacterized protein.	0.861
A0A1Y2AD57	A0A1Y2B6N6	Rep_fac_C domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.967
A0A1Y2AD57	A0A1Y2CE85	Rep_fac_C domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.985
A0A1Y2AD57	A0A1Y2CIN7	Rep_fac_C domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.970
A0A1Y2AD57	A0A1Y2CVX4	Rep_fac_C domain-containing protein.	Uncharacterized protein.	0.847
A0A1Y2AD57	A0A1Y2CWJ7	Rep_fac_C domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.761
A0A1Y2AD57	A0A1Y2CYD3	Rep_fac_C domain-containing protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.821
A0A1Y2AD57	A0A1Y2D3A1	Rep_fac_C domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.939
A0A1Y2B0P9	A0A1Y2AD57	DNA polymerase.	Rep_fac_C domain-containing protein.	0.780
A0A1Y2B0P9	A0A1Y2B562	DNA polymerase.	Uncharacterized protein.	0.773
A0A1Y2B0P9	A0A1Y2B6N6	DNA polymerase.	P-loop containing nucleoside triphosphate hydrolase protein.	0.906
A0A1Y2B0P9	A0A1Y2BP62	DNA polymerase.	P-loop containing nucleoside triphosphate hydrolase protein.	0.780
A0A1Y2B0P9	A0A1Y2CE85	DNA polymerase.	P-loop containing nucleoside triphosphate hydrolase protein.	0.887
A0A1Y2B0P9	A0A1Y2CIN7	DNA polymerase.	P-loop containing nucleoside triphosphate hydrolase protein.	0.920
A0A1Y2B0P9	A0A1Y2CVX4	DNA polymerase.	Uncharacterized protein.	0.861
A0A1Y2B0P9	A0A1Y2CWJ7	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.990
A0A1Y2B0P9	A0A1Y2CYD3	DNA polymerase.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.999
A0A1Y2B0P9	A0A1Y2D3A1	DNA polymerase.	P-loop containing nucleoside triphosphate hydrolase protein.	0.960
A0A1Y2B562	A0A1Y2AD57	Uncharacterized protein.	Rep_fac_C domain-containing protein.	0.861