A0A1Y2CXY8 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2CXY8

UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (181 aa)

Predicted Functional Partners:

A0A1Y2C6Z1

0.998

A0A1Y2BRV5

0.984

A0A1Y2BTG9

0.980

A0A1Y2CYT2

0.979

A0A1Y2D2W4

0.977

A0A1Y2BN53

0.976

A0A1Y2CWM9

0.964

A0A1Y2BYZ1

0.946

A0A1Y2CRT3

0.945

A0A1Y2C126

0.941

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2BN53	A0A1Y2BRV5	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	E2_bind domain-containing protein.	0.999
A0A1Y2BN53	A0A1Y2BTG9	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	UBC-like protein.	0.772
A0A1Y2BN53	A0A1Y2BYZ1	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	Cullin-domain-containing protein; Belongs to the cullin family.	0.787
A0A1Y2BN53	A0A1Y2C126	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	Ubiquitin-activating enzyme E1; Belongs to the ubiquitin-activating E1 family.	0.461
A0A1Y2BN53	A0A1Y2C6Z1	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	Ubiquitin.	0.984
A0A1Y2BN53	A0A1Y2CRT3	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	Cullin-domain-containing protein; Belongs to the cullin family.	0.787
A0A1Y2BN53	A0A1Y2CWM9	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.759
A0A1Y2BN53	A0A1Y2CXY8	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.976
A0A1Y2BN53	A0A1Y2CYT2	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.769
A0A1Y2BN53	A0A1Y2D2W4	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	RING/U-box.	0.815
A0A1Y2BRV5	A0A1Y2BN53	E2_bind domain-containing protein.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.	0.999
A0A1Y2BRV5	A0A1Y2BTG9	E2_bind domain-containing protein.	UBC-like protein.	0.984
A0A1Y2BRV5	A0A1Y2BYZ1	E2_bind domain-containing protein.	Cullin-domain-containing protein; Belongs to the cullin family.	0.835
A0A1Y2BRV5	A0A1Y2C126	E2_bind domain-containing protein.	Ubiquitin-activating enzyme E1; Belongs to the ubiquitin-activating E1 family.	0.985
A0A1Y2BRV5	A0A1Y2C6Z1	E2_bind domain-containing protein.	Ubiquitin.	0.998
A0A1Y2BRV5	A0A1Y2CRT3	E2_bind domain-containing protein.	Cullin-domain-containing protein; Belongs to the cullin family.	0.839
A0A1Y2BRV5	A0A1Y2CWM9	E2_bind domain-containing protein.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.797
A0A1Y2BRV5	A0A1Y2CXY8	E2_bind domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.984
A0A1Y2BRV5	A0A1Y2CYT2	E2_bind domain-containing protein.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.841
A0A1Y2BRV5	A0A1Y2D2W4	E2_bind domain-containing protein.	RING/U-box.	0.869