STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2CYP6Cysteinyl-tRNA synthetase. (768 aa)    
Predicted Functional Partners:
A0A1Y2BTN2
EEF1-gamma domain-containing protein.
   
 0.951
A0A1Y2CP47
LmbE-like protein.
  
 
 0.887
A0A1Y2ACJ4
Leucyl-tRNA synthetase.
  
 
 0.868
A0A1Y2CZD3
Tryptophan synthase.
  
 
 0.837
A0A1Y2CK88
Tyrosine--tRNA ligase.
  
 
 0.828
A0A1Y2D2F8
Phosphoserine phosphatase serb.
  
 
 0.826
A0A1Y2B6W5
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase.
    
 0.818
A0A1Y2C2S3
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
    
 0.809
A0A1Y2CZ79
Guanosine-3',5'-bis 3'-pyrophosphohydrolase MESH1-like protein.
    
 0.790
A0A1Y2CZB9
Adenosylhomocysteinase.
  
 
 0.789
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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