STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2CZN4L domain-like protein. (311 aa)    
Predicted Functional Partners:
A0A1Y2BUA0
Uncharacterized protein.
    
  0.707
A0A1Y2ASB6
PHD finger-like domain-containing protein 5A.
    
  0.585
A0A1Y2BX74
Small nuclear ribonucleoprotein Sm D3.
    
 0.573
A0A1Y2C083
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.565
A0A1Y2BYV0
Sm domain-containing protein.
    
  0.563
A0A1Y2C6Z4
RNA recognition protein.
    
 0.554
A0A1Y2C9Z7
U1 small nuclear ribonucleo protein A.
    
 0.554
A0A1Y2CYU4
Uncharacterized protein.
   
  0.554
A0A1Y2BCZ8
Small nuclear ribonucleoprotein G.
    
  0.549
A0A1Y2CYG4
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
  0.548
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
Server load: low (24%) [HD]