A0A1Y2D215 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2D215

RECA_2 domain-containing protein. (250 aa)

Predicted Functional Partners:

A0A1Y2CYK4

0.998

A0A1Y2BEI6

0.979

A0A1Y2D032

0.964

A0A1Y2BP08

0.961

A0A1Y2CNZ3

0.952

A0A1Y2C7E7

0.932

A0A1Y2AIT3

0.925

A0A1Y2ARW5

0.925

A0A1Y2B3F5

0.925

A0A1Y2BYS2

0.925

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2AIT3	A0A1Y2ARW5	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.726
A0A1Y2AIT3	A0A1Y2B3F5	3'-5' exonuclease domain-containing protein.	OTU domain-containing protein.	0.726
A0A1Y2AIT3	A0A1Y2BEI6	3'-5' exonuclease domain-containing protein.	Nucleic acid-binding protein.	0.981
A0A1Y2AIT3	A0A1Y2BP08	3'-5' exonuclease domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.989
A0A1Y2AIT3	A0A1Y2BYS2	3'-5' exonuclease domain-containing protein.	OTU domain-containing protein.	0.726
A0A1Y2AIT3	A0A1Y2C7E7	3'-5' exonuclease domain-containing protein.	ERCC4 domain-containing protein.	0.920
A0A1Y2AIT3	A0A1Y2CNZ3	3'-5' exonuclease domain-containing protein.	Recombination protein Rad52.	0.996
A0A1Y2AIT3	A0A1Y2CYK4	3'-5' exonuclease domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.999
A0A1Y2AIT3	A0A1Y2D032	3'-5' exonuclease domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.999
A0A1Y2AIT3	A0A1Y2D215	3'-5' exonuclease domain-containing protein.	RECA_2 domain-containing protein.	0.925
A0A1Y2ARW5	A0A1Y2AIT3	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.726
A0A1Y2ARW5	A0A1Y2B3F5	Uncharacterized protein.	OTU domain-containing protein.	0.726
A0A1Y2ARW5	A0A1Y2BEI6	Uncharacterized protein.	Nucleic acid-binding protein.	0.981
A0A1Y2ARW5	A0A1Y2BP08	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.989
A0A1Y2ARW5	A0A1Y2BYS2	Uncharacterized protein.	OTU domain-containing protein.	0.726
A0A1Y2ARW5	A0A1Y2C7E7	Uncharacterized protein.	ERCC4 domain-containing protein.	0.920
A0A1Y2ARW5	A0A1Y2CNZ3	Uncharacterized protein.	Recombination protein Rad52.	0.996
A0A1Y2ARW5	A0A1Y2CYK4	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.999
A0A1Y2ARW5	A0A1Y2D032	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.999
A0A1Y2ARW5	A0A1Y2D215	Uncharacterized protein.	RECA_2 domain-containing protein.	0.925