Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCX01917.1 | SCX06068.1 | SAMN02927925_00424 | SAMN02927925_00939 | Aspartate aminotransferase. | Isochorismate synthase. | 0.911 |
SCX01917.1 | SCX12500.1 | SAMN02927925_00424 | SAMN02927925_01808 | Aspartate aminotransferase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.687 |
SCX01917.1 | SCX14341.1 | SAMN02927925_00424 | SAMN02927925_02050 | Aspartate aminotransferase. | Aspartate aminotransferase. | 0.924 |
SCX06062.1 | SCX06068.1 | SAMN02927925_00938 | SAMN02927925_00939 | Uncharacterized domain 1-containing protein. | Isochorismate synthase. | 0.908 |
SCX06062.1 | SCX06075.1 | SAMN02927925_00938 | SAMN02927925_00940 | Uncharacterized domain 1-containing protein. | Bacillithiol biosynthesis deacetylase BshB1. | 0.781 |
SCX06062.1 | menB | SAMN02927925_00938 | SAMN02927925_00783 | Uncharacterized domain 1-containing protein. | 1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.962 |
SCX06062.1 | menD | SAMN02927925_00938 | SAMN02927925_00775 | Uncharacterized domain 1-containing protein. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.656 |
SCX06068.1 | SCX01917.1 | SAMN02927925_00939 | SAMN02927925_00424 | Isochorismate synthase. | Aspartate aminotransferase. | 0.911 |
SCX06068.1 | SCX06062.1 | SAMN02927925_00939 | SAMN02927925_00938 | Isochorismate synthase. | Uncharacterized domain 1-containing protein. | 0.908 |
SCX06068.1 | SCX06075.1 | SAMN02927925_00939 | SAMN02927925_00940 | Isochorismate synthase. | Bacillithiol biosynthesis deacetylase BshB1. | 0.780 |
SCX06068.1 | SCX06195.1 | SAMN02927925_00939 | SAMN02927925_00961 | Isochorismate synthase. | Anthranilate synthase component 2. | 0.972 |
SCX06068.1 | SCX06201.1 | SAMN02927925_00939 | SAMN02927925_00962 | Isochorismate synthase. | Anthranilate synthase component 1. | 0.976 |
SCX06068.1 | SCX12500.1 | SAMN02927925_00939 | SAMN02927925_01808 | Isochorismate synthase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.964 |
SCX06068.1 | SCX14341.1 | SAMN02927925_00939 | SAMN02927925_02050 | Isochorismate synthase. | Aspartate aminotransferase. | 0.911 |
SCX06068.1 | aroC | SAMN02927925_00939 | SAMN02927925_01231 | Isochorismate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.950 |
SCX06068.1 | menB | SAMN02927925_00939 | SAMN02927925_00783 | Isochorismate synthase. | 1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.789 |
SCX06068.1 | menD | SAMN02927925_00939 | SAMN02927925_00775 | Isochorismate synthase. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.989 |
SCX06075.1 | SCX06062.1 | SAMN02927925_00940 | SAMN02927925_00938 | Bacillithiol biosynthesis deacetylase BshB1. | Uncharacterized domain 1-containing protein. | 0.781 |
SCX06075.1 | SCX06068.1 | SAMN02927925_00940 | SAMN02927925_00939 | Bacillithiol biosynthesis deacetylase BshB1. | Isochorismate synthase. | 0.780 |
SCX06195.1 | SCX06068.1 | SAMN02927925_00961 | SAMN02927925_00939 | Anthranilate synthase component 2. | Isochorismate synthase. | 0.972 |
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