Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCX05671.1 | SCX07979.1 | SAMN02927925_00865 | SAMN02927925_01266 | Phosphate transport system protein; Plays a role in the regulation of phosphate uptake. | Hypothetical protein. | 0.431 |
SCX07973.1 | SCX07979.1 | SAMN02927925_01265 | SAMN02927925_01266 | Inorganic phosphate transporter, PiT family. | Hypothetical protein. | 0.983 |
SCX07973.1 | SCX07983.1 | SAMN02927925_01265 | SAMN02927925_01267 | Inorganic phosphate transporter, PiT family. | Acetyl-CoA carboxylase, carboxyltransferase component. | 0.468 |
SCX07979.1 | SCX05671.1 | SAMN02927925_01266 | SAMN02927925_00865 | Hypothetical protein. | Phosphate transport system protein; Plays a role in the regulation of phosphate uptake. | 0.431 |
SCX07979.1 | SCX07973.1 | SAMN02927925_01266 | SAMN02927925_01265 | Hypothetical protein. | Inorganic phosphate transporter, PiT family. | 0.983 |
SCX07979.1 | SCX07983.1 | SAMN02927925_01266 | SAMN02927925_01267 | Hypothetical protein. | Acetyl-CoA carboxylase, carboxyltransferase component. | 0.508 |
SCX07979.1 | gmk | SAMN02927925_01266 | SAMN02927925_02424 | Hypothetical protein. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.537 |
SCX07979.1 | rnpA | SAMN02927925_01266 | SAMN02927925_02266 | Hypothetical protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.537 |
SCX07979.1 | rpmB | SAMN02927925_01266 | SAMN02927925_01632 | Hypothetical protein. | Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.557 |
SCX07983.1 | SCX07973.1 | SAMN02927925_01267 | SAMN02927925_01265 | Acetyl-CoA carboxylase, carboxyltransferase component. | Inorganic phosphate transporter, PiT family. | 0.468 |
SCX07983.1 | SCX07979.1 | SAMN02927925_01267 | SAMN02927925_01266 | Acetyl-CoA carboxylase, carboxyltransferase component. | Hypothetical protein. | 0.508 |
gmk | SCX07979.1 | SAMN02927925_02424 | SAMN02927925_01266 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | Hypothetical protein. | 0.537 |
rnpA | SCX07979.1 | SAMN02927925_02266 | SAMN02927925_01266 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Hypothetical protein. | 0.537 |
rnpA | rpmB | SAMN02927925_02266 | SAMN02927925_01632 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.709 |
rpmB | SCX07979.1 | SAMN02927925_01632 | SAMN02927925_01266 | Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | Hypothetical protein. | 0.557 |
rpmB | rnpA | SAMN02927925_01632 | SAMN02927925_02266 | Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.709 |