STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCX12777.1Outer membrane protein assembly factor BamA. (853 aa)    
Predicted Functional Partners:
SCX07913.1
Family of unknown function.
 
   
 0.808
SCX05410.1
Beta-barrel assembly machine subunit BamD.
  
 
 0.789
SCX13394.1
Hypothetical protein.
  
 
 0.777
SCX13663.1
Papain family cysteine protease.
  
 
 0.777
SCX11217.1
Protein of unknown function.
  
 
   0.769
SCX10871.1
Hypothetical protein.
  
     0.759
SCX17585.1
Ig-like domain-containing protein.
  
     0.754
SCX12784.1
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
  
  0.752
SCX01203.1
Hypothetical protein.
   
 
 0.749
SCX07033.1
Hypothetical protein.
  
     0.748
Your Current Organism:
Flavobacterium saliperosum
NCBI taxonomy Id: 329186
Other names: AS 1.3801, CGMCC 1.3801, F. saliperosum, Flavobacterium saliperosum Wang et al. 2006 emend. Dong et al. 2013, Flavobacterium saliperosum Wang et al. 2006 emend. Hahnke et al. 2016, JCM 13331, strain S13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.