Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AM1_0420 | pilB | AM1_0420 | AM1_0419 | Hypothetical protein. | Type IV pilus assembly protein PilB. | 0.723 |
AM1_0420 | pilC | AM1_0420 | AM1_0417 | Hypothetical protein. | Member of bacterial type II secretion system protein F domain, PF00482. | 0.420 |
AM1_0420 | pilT | AM1_0420 | AM1_0418 | Hypothetical protein. | Type IV pili twitching motility protein PilT. | 0.526 |
AM1_1355 | AM1_2142 | AM1_1355 | AM1_2142 | General secretion pathway protein. | Competence protein, putative. | 0.476 |
AM1_1355 | pilB | AM1_1355 | AM1_0419 | General secretion pathway protein. | Type IV pilus assembly protein PilB. | 0.831 |
AM1_1355 | pilC | AM1_1355 | AM1_0417 | General secretion pathway protein. | Member of bacterial type II secretion system protein F domain, PF00482. | 0.869 |
AM1_1355 | pilD | AM1_1355 | AM1_2419 | General secretion pathway protein. | Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.814 |
AM1_1355 | pilM | AM1_1355 | AM1_1395 | General secretion pathway protein. | Type IV pilus assembly protein PilM. | 0.730 |
AM1_1355 | pilT | AM1_1355 | AM1_0418 | General secretion pathway protein. | Type IV pili twitching motility protein PilT. | 0.731 |
AM1_1398 | pilB | AM1_1398 | AM1_0419 | Secretion system protein. | Type IV pilus assembly protein PilB. | 0.651 |
AM1_1398 | pilC | AM1_1398 | AM1_0417 | Secretion system protein. | Member of bacterial type II secretion system protein F domain, PF00482. | 0.683 |
AM1_1398 | pilD | AM1_1398 | AM1_2419 | Secretion system protein. | Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.560 |
AM1_1398 | pilM | AM1_1398 | AM1_1395 | Secretion system protein. | Type IV pilus assembly protein PilM. | 0.789 |
AM1_1398 | pilN | AM1_1398 | AM1_1396 | Secretion system protein. | Fimbrial assembly protein PilN, putative. | 0.681 |
AM1_1398 | pilT | AM1_1398 | AM1_0418 | Secretion system protein. | Type IV pili twitching motility protein PilT. | 0.437 |
AM1_2142 | AM1_1355 | AM1_2142 | AM1_1355 | Competence protein, putative. | General secretion pathway protein. | 0.476 |
AM1_2142 | gsp | AM1_2142 | AM1_1357 | Competence protein, putative. | General secretion pathway protein; Member of prepilin-type N-terminal cleavage/methylation domain, TIGR02532, and prokaryotic N-terminal methylation motif PFAM, PF07963. | 0.476 |
AM1_2142 | pilB | AM1_2142 | AM1_0419 | Competence protein, putative. | Type IV pilus assembly protein PilB. | 0.580 |
AM1_2142 | pilC | AM1_2142 | AM1_0417 | Competence protein, putative. | Member of bacterial type II secretion system protein F domain, PF00482. | 0.766 |
AM1_2142 | pilD | AM1_2142 | AM1_2419 | Competence protein, putative. | Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.753 |
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