STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM1_0775Hydrolase, NUDIX family, putative. (154 aa)    
Predicted Functional Partners:
petJ
Cytochrome c6 PetJ.
  
     0.693
petJ-2
Cytochrome c6 PetJ; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
  
     0.651
AM1_1741
Conserved hypothetical protein.
  
     0.519
AM1_0776
Conserved hypothetical protein.
       0.485
psaE
Photosystem I protein PsaE; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
     0.460
ccb3
Cytochrome c biogenesis protein, putative, YGGT protein family, Ccb3; Gene named and identified based upon findings in Kuras, Richard, Denis Saint-Marcous, Francis-Andre Wollman and Catherine de Vitry. ''A specific c-type cytochrome maturation system is required for oxygenic photosynthesis.'' PNAS 104(2007): 9906-9910.
  
     0.455
psbO
Photosystem II manganese-stabilizing protein PsbO.
  
     0.447
psb28
Photosystem II protein Psb28 PsbW; Belongs to the Psb28 family.
  
     0.423
psbV
Cytochrome c550 subunit of photosystem II PsbV; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
  
     0.414
Your Current Organism:
Acaryochloris marina
NCBI taxonomy Id: 329726
Other names: A. marina MBIC11017, Acaryochloris marina MBIC11017
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