STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM1_1188Hypothetical protein. (317 aa)    
Predicted Functional Partners:
AM1_1189
Hypothetical protein.
       0.746
AM1_2136
N-acetylmuramoyl-L-alanine amidase, putative.
    
   0.617
AM1_2518
N-acetylmuramoyl-L-alanine amidase, putative.
    
   0.617
AM1_5313
N-acetylmuramoyl-L-alanine amidase.
    
   0.617
AM1_1190
Hypothetical protein.
       0.546
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.518
AM1_0648
ATP transporter, ATP-binding region.
   
 
 0.467
AM1_0974
ABC transporter, ATP-binding protein.
   
 
 0.467
AM1_0986
ABC transporter ATPase protein.
   
 
 0.467
AM1_1589
Conserved domain protein.
   
 
 0.467
Your Current Organism:
Acaryochloris marina
NCBI taxonomy Id: 329726
Other names: A. marina MBIC11017, Acaryochloris marina MBIC11017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.