Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AM1_1237TPR domain protein. (1865 aa)    
Predicted Functional Partners:
AM1_3784
TPR repeat protein.
  
 
   0.663
AM1_3783
Tetratricopeptide repeat-containing protein, putative.
 
 
   0.656
AM1_4750
Tetratricopeptide repeat-containing protein.
 
 
   0.640
AM1_4749
Tetratricopeptide repeat-containing protein.
  
 
   0.561
AM1_1236
Conserved hypothetical protein.
       0.527
AM1_4591
TPR domain protein.
  
 
   0.524
AM1_4653
Conserved hypothetical protein.
  
     0.520
AM1_1787
TPR domain protein.
  
     0.510
AM1_4307
TPR domain protein.
  
     0.506
AM1_2955
TPR domain protein.
  
 
   0.499
Your Current Organism:
Acaryochloris marina
NCBI taxonomy Id: 329726
Other names: A. marina MBIC11017, Acaryochloris marina MBIC11017
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