STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM1_1264Serine-pyruvate transaminase. (373 aa)    
Predicted Functional Partners:
AM1_1265
Class I peptide chain release factor, putative; Contains Peptidyl-tRNA hydrolase domain.
       0.664
AM1_3287
Hypothetical protein.
  
     0.579
AM1_1266
Excinuclease ABC, C subunit domain protein; Identified by homology to PF01541: GIY-YIG catalytic domain.
       0.523
AM1_2031
Acetyltransferase, gnat family.
  
     0.486
AM1_0280
Conserved hypothetical protein.
  
     0.478
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.477
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
  
    0.475
gltB
Ferredoxin-dependent glutamate synthase.
  
  
 0.459
AM1_6366
Ferredoxin dependent glutamate synthase 1, putative.
  
  
 0.459
Your Current Organism:
Acaryochloris marina
NCBI taxonomy Id: 329726
Other names: A. marina MBIC11017, Acaryochloris marina MBIC11017
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