STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM1_1452RDD domain protein. (596 aa)    
Predicted Functional Partners:
AM1_3172
Integral membrane protein.
    0.853
AM1_2362
Conserved hypothetical protein.
 
    0.795
AM1_2360
Conserved hypothetical protein.
 
     0.784
rpsA
30S ribosomal protein S1.
  
    0.570
AM1_4358
Hypothetical protein.
  
     0.535
AM1_2687
FHA domain containing protein.
  
     0.521
AM1_0729
DNA modification methyltransferase, putative.
  
     0.448
AM1_6307
Transcriptional regulator with ATPase activity.
 
    0.442
pilO
Type IV pilus assembly protein PilO, putative.
  
     0.412
Your Current Organism:
Acaryochloris marina
NCBI taxonomy Id: 329726
Other names: A. marina MBIC11017, Acaryochloris marina MBIC11017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.