Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AM1_0582 | AM1_1416 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | PAS sensor diguanylate cyclase/phophodiesterase, putative. | 0.819 |
AM1_0582 | AM1_3285 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Diguanylate cyclase/phosphodiesterase, putative. | 0.531 |
AM1_0582 | AM1_3330 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | 0.901 |
AM1_0582 | AM1_3454 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Signal transduction protein containing an EAL domain, a PAS domain, a CBS domain pair and a GGDEF domain. | 0.862 |
AM1_0582 | AM1_3711 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Diguanylate cyclase (GGDEF) domain protein. | 0.663 |
AM1_0582 | AM1_4827 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Ggdef family protein. | 0.579 |
AM1_0582 | AM1_6199 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Diguanylate cyclase (GGDEF domain), putative. | 0.535 |
AM1_1416 | AM1_0582 | PAS sensor diguanylate cyclase/phophodiesterase, putative. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | 0.819 |
AM1_1416 | AM1_3285 | PAS sensor diguanylate cyclase/phophodiesterase, putative. | Diguanylate cyclase/phosphodiesterase, putative. | 0.532 |
AM1_1416 | AM1_3330 | PAS sensor diguanylate cyclase/phophodiesterase, putative. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | 0.793 |
AM1_1416 | AM1_3454 | PAS sensor diguanylate cyclase/phophodiesterase, putative. | Signal transduction protein containing an EAL domain, a PAS domain, a CBS domain pair and a GGDEF domain. | 0.798 |
AM1_1416 | AM1_3711 | PAS sensor diguanylate cyclase/phophodiesterase, putative. | Diguanylate cyclase (GGDEF) domain protein. | 0.412 |
AM1_1416 | AM1_4827 | PAS sensor diguanylate cyclase/phophodiesterase, putative. | Ggdef family protein. | 0.572 |
AM1_1416 | AM1_6199 | PAS sensor diguanylate cyclase/phophodiesterase, putative. | Diguanylate cyclase (GGDEF domain), putative. | 0.540 |
AM1_1416 | AM1_6306 | PAS sensor diguanylate cyclase/phophodiesterase, putative. | Response regulator. | 0.880 |
AM1_3283 | AM1_3284 | Transposase, IS4 family. | Conserved hypothetical protein. | 0.634 |
AM1_3283 | AM1_3285 | Transposase, IS4 family. | Diguanylate cyclase/phosphodiesterase, putative. | 0.472 |
AM1_3284 | AM1_3283 | Conserved hypothetical protein. | Transposase, IS4 family. | 0.634 |
AM1_3284 | AM1_3285 | Conserved hypothetical protein. | Diguanylate cyclase/phosphodiesterase, putative. | 0.567 |
AM1_3285 | AM1_0582 | Diguanylate cyclase/phosphodiesterase, putative. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | 0.531 |
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