Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AM1_4792RNA-directed DNA polymerase. (476 aa)    
Predicted Functional Partners:
AM1_4525
SWIM zinc finger domain protein, putative.
 
     0.784
AM1_4526
Conserved domain protein.
 
     0.780
AM1_3493
Conserved hypothetical protein.
 
     0.688
AM1_2054
Conserved hypothetical protein.
  
     0.485
AM1_5251
Conserved hypothetical protein.
  
     0.477
AM1_0115
Hypothetical protein.
  
     0.473
AM1_0983
phytanoyl-CoA dioxygenase (PhyH) superfamily, putative.
  
     0.450
AM1_3765
Hypothetical protein.
  
     0.436
AM1_5344
Appr-1-p processing enzyme family, putative.
  
     0.401
Your Current Organism:
Acaryochloris marina
NCBI taxonomy Id: 329726
Other names: A. marina MBIC11017, Acaryochloris marina MBIC11017
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