STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmM-2Carbon dioxide concentrating mechanism protein CcmM. (803 aa)    
Predicted Functional Partners:
rbcL
Ribulose bisphosphate carboxylase large chain RbcL; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
  
 
 0.999
AM1_3470
Carbonic anhydrase.
    
 
 0.999
ccmM
Carbon dioxide concentrating mechanism protein CcmM.
 
 
 
0.972
rbcS
Ribulose bisphosphate carboxylase, small subunit RbcS.
    
 
 0.956
AM1_5384
Conserved hypothetical protein.
 
   
 0.916
ccmL
Carbon dioxide concentrating mechanism protein CcmL.
   
 
 0.893
ccmK-5
Carbon dioxide concentrating mechanism protein CcmK.
   
 
 0.873
ccmK-6
Carbon dioxide concentrating mechanism protein.
   
 
 0.868
AM1_1784
RbcX chaperonin protein.
 
   
 0.796
AM1_5377
Carbon dioxide hydration protein.
  
   
 0.793
Your Current Organism:
Acaryochloris marina
NCBI taxonomy Id: 329726
Other names: A. marina MBIC11017, Acaryochloris marina MBIC11017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.