Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AM1_0520 | AM1_3839 | Hypothetical protein. | Hypothetical protein. | 0.749 |
AM1_0520 | AM1_4529 | Hypothetical protein. | Conserved hypothetical protein. | 0.451 |
AM1_0520 | AM1_5460 | Hypothetical protein. | Hypothetical protein. | 0.527 |
AM1_1220 | AM1_1463 | Conserved hypothetical protein. | Staphylococcal nuclease domain, putative. | 0.682 |
AM1_1220 | AM1_2297 | Conserved hypothetical protein. | Acetyltransferase, gnat family, putative. | 0.431 |
AM1_1220 | AM1_5460 | Conserved hypothetical protein. | Hypothetical protein. | 0.684 |
AM1_1463 | AM1_1220 | Staphylococcal nuclease domain, putative. | Conserved hypothetical protein. | 0.682 |
AM1_1463 | AM1_5460 | Staphylococcal nuclease domain, putative. | Hypothetical protein. | 0.534 |
AM1_1574 | AM1_5460 | Hypothetical protein. | Hypothetical protein. | 0.525 |
AM1_2297 | AM1_1220 | Acetyltransferase, gnat family, putative. | Conserved hypothetical protein. | 0.431 |
AM1_2297 | AM1_5460 | Acetyltransferase, gnat family, putative. | Hypothetical protein. | 0.571 |
AM1_2297 | AM1_6382 | Acetyltransferase, gnat family, putative. | Glycosyl transferase, group 1 family protein. | 0.586 |
AM1_2642 | AM1_5460 | Hypothetical protein. | Hypothetical protein. | 0.520 |
AM1_3839 | AM1_0520 | Hypothetical protein. | Hypothetical protein. | 0.749 |
AM1_3839 | AM1_5460 | Hypothetical protein. | Hypothetical protein. | 0.638 |
AM1_3839 | AM1_5678 | Hypothetical protein. | Hypothetical protein. | 0.756 |
AM1_4529 | AM1_0520 | Conserved hypothetical protein. | Hypothetical protein. | 0.451 |
AM1_4529 | AM1_5460 | Conserved hypothetical protein. | Hypothetical protein. | 0.774 |
AM1_4529 | AM1_5678 | Conserved hypothetical protein. | Hypothetical protein. | 0.482 |
AM1_5460 | AM1_0520 | Hypothetical protein. | Hypothetical protein. | 0.527 |
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