STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM1_6323Protein tyrosine phosphatase, putative. (142 aa)    
Predicted Functional Partners:
AM1_3100
Low molecular weight protein-tyrosine-phosphatase.
     
  0.900
AM1_6324
Aminotransferase, class V superfamily protein.
       0.664
AM1_4910
Thioredoxin reductase, putative.
  
 
 0.504
acr3
Arsenical-resistance protein ACR3, putative; Also member of sodium bile acid symporter family, PF01758.
  
  
 0.453
AM1_0391
Lipopolysaccharide biosynthesis protein, putative.
  
 
 0.441
AM1_0407
Lipopolysaccharide biosynthesis protein, putative; Member of chain length determinant protein domain (on N terminal), PF02706, and COG3206, uncharacterized proteins involved in exopolysaccharide biosynthesis.
  
 
 0.441
AM1_1910
Lipopolysaccharide biosynthesis protein, putative; Member of chain length determinant protein domain on the N terminal, PF02706, and COG0489, ATPases involved in chromosome partitioning.
  
 
 0.441
AM1_4837
Lipopolysaccharide biosynthesis protein, putative.
  
 
 0.441
AM1_4861
Conserved hypothetical protein.
  
 
 0.441
AM1_5726
Lipopolysaccharide biosynthesis protein, putative.
  
 
 0.441
Your Current Organism:
Acaryochloris marina
NCBI taxonomy Id: 329726
Other names: A. marina MBIC11017, Acaryochloris marina MBIC11017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.