B0A54_17883 protein (Friedmanniomyces endolithicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A54_17883

Uncharacterized protein. (275 aa)

Predicted Functional Partners:

BNA5

0.986

BNA5-2

0.986

B0A54_17510

0.752

B0A54_13953

0.752

B0A54_10863

0.743

B0A54_07337

0.743

B0A54_08269

0.742

B0A54_02803

0.742

B0A54_14390

0.669

B0A54_04379

0.669

Your Current Organism:

Friedmanniomyces endolithicus

NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A54_02803	B0A54_04379	A0A4U0VGI9	A0A4U0V9F7	Acetyl-CoA carboxylase.	Uncharacterized protein.	0.934
B0A54_02803	B0A54_07337	A0A4U0VGI9	A0A4V5N8D0	Acetyl-CoA carboxylase.	Malate synthase; Belongs to the malate synthase family.	0.760
B0A54_02803	B0A54_10863	A0A4U0VGI9	A0A4U0UW04	Acetyl-CoA carboxylase.	Malate synthase; Belongs to the malate synthase family.	0.760
B0A54_02803	B0A54_14390	A0A4U0VGI9	A0A4U0UCI2	Acetyl-CoA carboxylase.	Uncharacterized protein.	0.934
B0A54_02803	B0A54_17883	A0A4U0VGI9	A0A4U0TLZ4	Acetyl-CoA carboxylase.	Uncharacterized protein.	0.742
B0A54_04379	B0A54_02803	A0A4U0V9F7	A0A4U0VGI9	Uncharacterized protein.	Acetyl-CoA carboxylase.	0.934
B0A54_04379	B0A54_07337	A0A4U0V9F7	A0A4V5N8D0	Uncharacterized protein.	Malate synthase; Belongs to the malate synthase family.	0.831
B0A54_04379	B0A54_08269	A0A4U0V9F7	A0A4U0V113	Uncharacterized protein.	Acetyl-CoA carboxylase.	0.934
B0A54_04379	B0A54_10863	A0A4U0V9F7	A0A4U0UW04	Uncharacterized protein.	Malate synthase; Belongs to the malate synthase family.	0.831
B0A54_04379	B0A54_14390	A0A4U0V9F7	A0A4U0UCI2	Uncharacterized protein.	Uncharacterized protein.	0.839
B0A54_04379	B0A54_17883	A0A4U0V9F7	A0A4U0TLZ4	Uncharacterized protein.	Uncharacterized protein.	0.669
B0A54_07337	B0A54_02803	A0A4V5N8D0	A0A4U0VGI9	Malate synthase; Belongs to the malate synthase family.	Acetyl-CoA carboxylase.	0.760
B0A54_07337	B0A54_04379	A0A4V5N8D0	A0A4U0V9F7	Malate synthase; Belongs to the malate synthase family.	Uncharacterized protein.	0.831
B0A54_07337	B0A54_08269	A0A4V5N8D0	A0A4U0V113	Malate synthase; Belongs to the malate synthase family.	Acetyl-CoA carboxylase.	0.760
B0A54_07337	B0A54_14390	A0A4V5N8D0	A0A4U0UCI2	Malate synthase; Belongs to the malate synthase family.	Uncharacterized protein.	0.831
B0A54_07337	B0A54_17883	A0A4V5N8D0	A0A4U0TLZ4	Malate synthase; Belongs to the malate synthase family.	Uncharacterized protein.	0.743
B0A54_08269	B0A54_04379	A0A4U0V113	A0A4U0V9F7	Acetyl-CoA carboxylase.	Uncharacterized protein.	0.934
B0A54_08269	B0A54_07337	A0A4U0V113	A0A4V5N8D0	Acetyl-CoA carboxylase.	Malate synthase; Belongs to the malate synthase family.	0.760
B0A54_08269	B0A54_10863	A0A4U0V113	A0A4U0UW04	Acetyl-CoA carboxylase.	Malate synthase; Belongs to the malate synthase family.	0.760
B0A54_08269	B0A54_14390	A0A4U0V113	A0A4U0UCI2	Acetyl-CoA carboxylase.	Uncharacterized protein.	0.934