STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A54_17479Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (532 aa)    
Predicted Functional Partners:
B0A54_08473
Deacetylase sirtuin-type domain-containing protein.
    
 0.958
B0A54_13599
Importin N-terminal domain-containing protein.
    
   0.946
B0A54_12730
Importin subunit alpha; Belongs to the importin alpha family.
    
   0.946
B0A54_11500
Importin subunit alpha; Belongs to the importin alpha family.
    
   0.946
B0A54_11639
Importin N-terminal domain-containing protein.
    
   0.946
B0A54_10375
PUM-HD domain-containing protein.
   
 
 0.915
B0A54_09003
PUM-HD domain-containing protein.
   
 
 0.915
B0A54_11842
Brix domain-containing protein.
   
   0.912
B0A54_16484
Brix domain-containing protein.
   
   0.912
B0A54_01225
RRM domain-containing protein.
   
   0.904
Your Current Organism:
Friedmanniomyces endolithicus
NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus
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