STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A54_16021Rab-GAP TBC domain-containing protein. (797 aa)    
Predicted Functional Partners:
B0A54_06882
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.939
B0A54_00986
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.939
B0A54_01371
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.779
B0A54_00110
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.779
B0A54_17887
Uncharacterized protein.
   
 
 0.674
B0A54_10419
Vacuolar protein sorting-associated protein 26.
   
 
 0.674
B0A54_05299
Vacuolar protein sorting-associated protein 26.
   
 
 0.674
B0A54_18060
Ras-related protein Rab6.
   
 
 0.559
B0A54_18016
Ras-related protein Rab-6B.
   
 
 0.559
B0A54_15444
Ras-related protein Rab6.
   
 
 0.559
Your Current Organism:
Friedmanniomyces endolithicus
NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus
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