B0A54_15200 protein (Friedmanniomyces endolithicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A54_15200

Uncharacterized protein; Belongs to the TPP enzyme family. (563 aa)

Predicted Functional Partners:

B0A54_01217

0.997

B0A54_00584

0.997

B0A54_15199

0.918

B0A54_11878

0.918

B0A54_03661

0.881

B0A54_02112

0.881

B0A54_08368

0.875

B0A54_02046

0.875

B0A54_14435

0.846

B0A54_06532

0.846

Your Current Organism:

Friedmanniomyces endolithicus

NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A54_00584	B0A54_02046	A0A4V5N9X5	A0A4U0VG41	ACT domain-containing protein.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.943
B0A54_00584	B0A54_02112	A0A4V5N9X5	A0A4U0VFE1	ACT domain-containing protein.	Uncharacterized protein.	0.796
B0A54_00584	B0A54_03661	A0A4V5N9X5	A0A4U0VCW7	ACT domain-containing protein.	Uncharacterized protein.	0.796
B0A54_00584	B0A54_06532	A0A4V5N9X5	A0A4U0UZL3	ACT domain-containing protein.	Uncharacterized protein.	0.811
B0A54_00584	B0A54_08368	A0A4V5N9X5	A0A4U0UUG6	ACT domain-containing protein.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.943
B0A54_00584	B0A54_11878	A0A4V5N9X5	A0A4U0UP07	ACT domain-containing protein.	Uncharacterized protein.	0.796
B0A54_00584	B0A54_14435	A0A4V5N9X5	A0A4U0UAP3	ACT domain-containing protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.811
B0A54_00584	B0A54_15199	A0A4V5N9X5	A0A4U0U6L1	ACT domain-containing protein.	Uncharacterized protein.	0.796
B0A54_00584	B0A54_15200	A0A4V5N9X5	A0A4U0U8Q3	ACT domain-containing protein.	Uncharacterized protein; Belongs to the TPP enzyme family.	0.997
B0A54_01217	B0A54_02046	A0A4U0VIM3	A0A4U0VG41	ACT domain-containing protein.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.943
B0A54_01217	B0A54_02112	A0A4U0VIM3	A0A4U0VFE1	ACT domain-containing protein.	Uncharacterized protein.	0.796
B0A54_01217	B0A54_03661	A0A4U0VIM3	A0A4U0VCW7	ACT domain-containing protein.	Uncharacterized protein.	0.796
B0A54_01217	B0A54_06532	A0A4U0VIM3	A0A4U0UZL3	ACT domain-containing protein.	Uncharacterized protein.	0.811
B0A54_01217	B0A54_08368	A0A4U0VIM3	A0A4U0UUG6	ACT domain-containing protein.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.943
B0A54_01217	B0A54_11878	A0A4U0VIM3	A0A4U0UP07	ACT domain-containing protein.	Uncharacterized protein.	0.796
B0A54_01217	B0A54_14435	A0A4U0VIM3	A0A4U0UAP3	ACT domain-containing protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.811
B0A54_01217	B0A54_15199	A0A4U0VIM3	A0A4U0U6L1	ACT domain-containing protein.	Uncharacterized protein.	0.796
B0A54_01217	B0A54_15200	A0A4U0VIM3	A0A4U0U8Q3	ACT domain-containing protein.	Uncharacterized protein; Belongs to the TPP enzyme family.	0.997
B0A54_02046	B0A54_00584	A0A4U0VG41	A0A4V5N9X5	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	ACT domain-containing protein.	0.943
B0A54_02046	B0A54_01217	A0A4U0VG41	A0A4U0VIM3	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	ACT domain-containing protein.	0.943