STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A54_13425DBR1 domain-containing protein. (567 aa)    
Predicted Functional Partners:
B0A54_14670
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16.
    
 
 0.813
B0A54_08892
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16.
    
 
 0.813
B0A54_05827
Uncharacterized protein.
   
 
 0.747
B0A54_05222
Uncharacterized protein.
   
 
 0.747
B0A54_13417
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.
    
 
 0.580
B0A54_06474
Uncharacterized protein.
    
 
 0.580
B0A54_06576
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.
    
 
 0.580
B0A54_07403
Uncharacterized protein.
   
  
 0.529
B0A54_05341
Uncharacterized protein.
   
  
 0.529
B0A54_13628
Uncharacterized protein.
    
 
 0.516
Your Current Organism:
Friedmanniomyces endolithicus
NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.