B0A54_11424 protein (Friedmanniomyces endolithicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A54_11424

Isopentenyl-diphosphate Delta-isomerase. (267 aa)

Predicted Functional Partners:

B0A54_11562

0.957

B0A54_00473

0.957

B0A54_07709

0.932

B0A54_01509

0.932

B0A54_13099

0.929

B0A54_07725

0.928

B0A54_01524

0.928

B0A54_02259

0.902

B0A54_00235

0.902

B0A54_15248

0.901

Your Current Organism:

Friedmanniomyces endolithicus

NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A54_00235	B0A54_00473	A0A4U0VK36	A0A4U0VH02	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	0.883
B0A54_00235	B0A54_01509	A0A4U0VK36	A0A4U0VG32	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.802
B0A54_00235	B0A54_01524	A0A4U0VK36	A0A4U0VGH2	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.778
B0A54_00235	B0A54_07709	A0A4U0VK36	A0A4U0UYL3	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.802
B0A54_00235	B0A54_07725	A0A4U0VK36	A0A4U0UYU6	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.778
B0A54_00235	B0A54_11424	A0A4U0VK36	A0A4U0UMU4	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Isopentenyl-diphosphate Delta-isomerase.	0.902
B0A54_00235	B0A54_11562	A0A4U0VK36	A0A4U0UP75	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	0.883
B0A54_00235	B0A54_13099	A0A4U0VK36	A0A4U0UK88	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein.	0.714
B0A54_00235	B0A54_15248	A0A4U0VK36	A0A4U0UI43	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	SE domain-containing protein.	0.934
B0A54_00473	B0A54_00235	A0A4U0VH02	A0A4U0VK36	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.883
B0A54_00473	B0A54_01509	A0A4U0VH02	A0A4U0VG32	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.968
B0A54_00473	B0A54_01524	A0A4U0VH02	A0A4U0VGH2	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.845
B0A54_00473	B0A54_02259	A0A4U0VH02	A0A4U0VBT9	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.883
B0A54_00473	B0A54_07709	A0A4U0VH02	A0A4U0UYL3	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.968
B0A54_00473	B0A54_07725	A0A4U0VH02	A0A4U0UYU6	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.845
B0A54_00473	B0A54_11424	A0A4U0VH02	A0A4U0UMU4	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	Isopentenyl-diphosphate Delta-isomerase.	0.957
B0A54_00473	B0A54_13099	A0A4U0VH02	A0A4U0UK88	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	Uncharacterized protein.	0.949
B0A54_00473	B0A54_15248	A0A4U0VH02	A0A4U0UI43	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	SE domain-containing protein.	0.783
B0A54_01509	B0A54_00235	A0A4U0VG32	A0A4U0VK36	Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.802
B0A54_01509	B0A54_00473	A0A4U0VG32	A0A4U0VH02	Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	0.968